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Basic Research Skills Seminar (17 May 2017)

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Basic Research Skills Seminar

Centre for Genomic Sciences

Analysis of ChIP-seq Data

Ms Yiming Qin

17 May 2017 (Wed) 3:00-4:00pm

Seminar Room 2, G/F
The Hong Kong Jockey Club Building for Interdisciplinary Research
 5 Sassoon Road, Pokfulam, Hong Kong

 
Abstract:

ChIP-seq, short for Chromatin Immunoprecipitation (ChIP) with high-throughput DNA sequencing, is widely used in mapping profiles of protein-DNA interactions and histone modifications. It has greatly facilitated the understanding the functions of protein-DNA binding and various regulatory elements in diverse biological processes. In this seminar, we will discuss the basic command-line or webpage based ChIP-seq data analysis pipeline, including quality control, alignment, peak calling, peak annotation, motif detection and result visualization. Comparative ChIP-seq data analysis and integrative analysis with other OMICs data will also be covered.
 

Other seminars in the series:

Pharmacogenetics by Dr Ching Lung Cheung
31 May 2017 (Wed) 3:00-4:00pm

Introduction to Python: The Multi-Purpose Programming Language by Mr Robert Porsch
14 Jun 2017 (Wed) 3:00-4:00pm

ALL ARE WELCOME

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