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Along with the analysis pipelines developed at CGS, we have also accumulated resources that are useful for various types of data analysis. To facilitate other fellow bioinformaticians, these resources will be available through this website.


Exome Target Regions

The BED files were generated by merging the target and probe regions (provided by vendor), followed by adding 200bp padded region (100bp upstream and 100bp downstream). Conversion from hg19 to hg38 was done using Batch Coordinate Conversion (liftOver) from UCSC Genome Browser Utilities. The workflow is shown as below:

Exome Target Regions workflow



The padded combined regions in BED format can be downloaded by clicking the links below:

SeqCap EZ Exome + UTR1

[ hg19 MD5:2de06c08d21a97642c1a50ac609c32b2 ] [ hg38 MD5:c83c85ea28546ca58e06005ad752741d ]

1The original target and probe region files can be downloaded here.

xGen® Exome Research Panel v1.02

[ hg19 MD5:c79c2a7e3d9ba77b3c4f2f9e3eebce1b ] [ hg38 MD5:380d6ca15ee5d76d54ab1d843e31d49b ]

2The original target and probe region files can be downloaded here.