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Joint Research Seminar (24 Apr 2014)

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Joint Research Seminar

Genomics Strategic Research Theme
Centre for Genomic Sciences

A Protein-Domain Approach
for the Analysis of Disease Mutations

Dr Maricel G Kann
University of Maryland
Baltimore County


24 April 2014 (Thu)

3:30 – 5:00 pm


Seminar Room 1
Laboratory Block, Faculty of Medicine Building
21 Sassoon Road, Pokfulam, HK

 
Abstract:

Identifying the functional context for key molecular disruptions in complex diseases is a major goal of modern medicine that will lead to earlier diagnosis and more effective personalized therapies. Most available resources for visualization and analysis of disease mutations center on gene analysis and do not leverage information about the functional context of the mutation. In addition, these gene-centric approaches are confounded by the fact that gene products (proteins) may share some functional sub-units or protein domains but not others. I will describe a resource for domain mapping of disease mutations, DMDM, a protein domain database developed by our group in which each disease mutation is aggregated and displayed by its protein domain location. We have also developed a methodology using domain significance scores (DS-Scores) to detect statistically significant disease mutation clusters at the protein domain level. When we applied the DS-Scores to human data, we identified domain hotspots in oncogenes, tumor suppressors, as well as in genes associated with Mendelian diseases. In addition, I will describe recent work on analyzing cancer somatic mutations from individual cancer patient genomes. We found that incorporating information about classification of proteins and protein sites leads to new hypotheses regarding the role of tumor somatic mutations in cancer. Our analysis confirms that the domain-centric approach creates a framework for leveraging structural genomics and evolution into the analysis of disease mutations.
 
 
 
About the Speaker: 

Dr. Maricel Kann is an Associate Professor at the University of Maryland, Baltimore County. She received a B. Sc. degree in Chemistry and a graduate degree in Pharmaceutical Chemistry from the Universidad de la Republica in Montevideo (Uruguay), where she was a research assistant in the Quantum Chemistry Department. Dr. Kann's research focuses on computational approaches to annotate the human genome with the goal of revealing the molecular underpinning of human diseases.
 

ALL ARE WELCOME


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